Publications

Manuscripts under peer review(*co-first author):

ORCID iD iconorcid.org/0000-0002-4241-8099

In the oven

  • Stefan Dentro, …,Yupeng Cun(14th/64), et al.;The evolutionary history of 2,658 cancers.  
  • Stefan Dentro, …, Yupeng Cun(20th/67), et al. Portraits of genetic intra-tumour heterogeneity and subclonal selection across cancer types.

1. Primary research papers

  1. Yupeng Cun*(寸玉鹏), Tsun-Po Yang*, Viktor Achter*, Ulrich Lang, Martin Peifer, Copy number analysis and inference of subclonal populations in cancer genomes using Sclust. Nature Protocols, 2018,DOI: 10.1038/nprot.2018.033
  2. Yupeng Cun(寸玉鹏), Holger Fröhlich: netClass: an R-package for network based, integrative biomarker signature discovery. Bioinformatics 01/2014; 30(9)., DOI:10.1093/bioinformatics/btu025
  3. Yupeng Cun(寸玉鹏), Holger Fröhlich: Network and data integration for biomarker signature discovery via network smoothed T-statistics. PLoS ONE  2013; 8(9):e73074., DOI:10.1371/journal.pone.0073074
  4. Yupeng Cun(寸玉鹏), Holger Fröhlich:  Prognostic gene signatures for patient stratification in breast cancer: accuracy, stability and interpretability of gene selection approaches using prior knowledge on protein-protein interactions. BMC Bioinformatics  2012; 13:69., DOI:10.1186/1471-2105-13-69
  5. Yupeng Cun#(寸玉鹏), Holger Fröhlich: Biomarker gene signature discovery integrating network knowledge. MPDI Biology, 2012 DOI:10.3390/biology1010005

2. Collaborative papers with major contributions

  1. Julie George*, Jing Shan Lim*, Se Jin Jang, Yupeng Cun(寸玉鹏4th/96), … , Roman K. Thomas: Comprehensive genomic profiles of small cell lung cancer. Nature 07/2015; 524(7563), DOI:10.1038/nature14664
  2. Changjun Huang, Yupeng Cun(寸玉鹏), …, Yong Liu,(2017) Transcriptomic profile of tobacco in response to Tomato zonate spot orthotospovirus infection. Virology Journal :14(1) .2017

3. Collaborative papers with minor contributions

  1. Julie George, …, Yupeng Cun(寸玉鹏, 28th /68), …, , Roman Thomas*, Integrative genomic profiling of large-cell neuroendocrine carcinomas reveals distinct molecular subtypes of high-grade neuroendocrine lung tumors, Nature Communications, | (2018) 9:1048 |DOI: 10.1038/s41467-018-03099-x
  2. Gero Knittel, …, Yupeng Cun (寸玉鹏,9th/32), …., Christian Reinhardt,  Two mouse models reveal an actionable PARP1 dependence in aggressive chronic lymphocytic leukemia. Nature Communications, 2017,DOI: 10.1038/s41467-017-00210-6