Publications

Manuscripts under peer review（*co-first author）：

orcid.org/0000-0002-4241-8099

In the oven

• Stefan Dentro, …,Yupeng Cun(14^th/64), et al.;The evolutionary history of 2,658 cancers.  bioRxiv 161562; 
• Stefan Dentro, …, Yupeng Cun(20^th/67), et al. Portraits of genetic intra-tumour heterogeneity and subclonal selection across cancer types.

All peer-reviewer publications

Major contribution works:

• 7. Yupeng Cun*, Tsun-Po Yang*, Viktor Achter*, Ulrich Lang, Martin Peifer, Copy number analysis and inference of subclonal populations in cancer genomes using Sclust. Nature Protocols, 2018，DOI: 10.1038/nprot.2018.033
• 6. Julie George*, Jing Shan Lim*, Se Jin Jang, Yupeng Cun(寸玉鹏，4th/96), … , Roman K. Thomas: Comprehensive genomic profiles of small cell lung cancer. Nature 07/2015; 524(7563), DOI:10.1038/nature14664
• 5. Yupeng Cun, Holger Fröhlich: netClass: an R-package for network based, integrative biomarker signature discovery. Bioinformatics 01/2014; 30(9)., DOI:10.1093/bioinformatics/btu025
• 4. Yupeng Cun, Holger Fröhlich: Network and data integration for biomarker signature discovery via network smoothed T-statistics. PLoS ONE  2013; 8(9):e73074., DOI:10.1371/journal.pone.0073074
• 3. Yupeng Cun, Holger Fröhlich: Integrating Prior Knowledge Into Prognostic Biomarker Discovery based on Network Structure, arxiv.org/abs/1212.3214
• 2. Yupeng Cun, Holger Fröhlich:  Prognostic gene signatures for patient stratification in breast cancer: accuracy, stability and interpretability of gene selection approaches using prior knowledge on protein-protein interactions. BMC Bioinformatics  2012; 13:69., DOI:10.1186/1471-2105-13-69
• 1. Yupeng Cun#, Holger Fröhlich: Biomarker gene signature discovery integrating network knowledge. MPDI Biology, 2012 DOI:10.3390/biology1010005

Collaborate works:

1. Julie George, …, Yupeng Cun(28th /68), …, , Roman Thomas*, Integrative genomic profiling of large-cell neuroendocrine carcinomas reveals distinct molecular subtypes of high-grade neuroendocrine lung tumors, Nature Communications, | (2018) 9:1048 |DOI: 10.1038/s41467-018-03099-x
2. Changjun Huang, Yupeng Cun, …, Yong Liu,(2017) Transcriptomic profile of tobacco in response to Tomato zonate spot orthotospovirus infection. Virology Journal :14(1) .2017
3. Gero Knittel, …, Yupeng Cun (9th/32), …., Christian Reinhardt,  Two mouse models reveal an actionable PARP1 dependence in aggressive chronic lymphocytic leukemia. Nature Communications, 2017，DOI: 10.1038/s41467-017-00210-6