Pubs

Manuscripts under peer review(*co-first author):

Orcid ID: orcid.org/0000-0002-4241-8099

ResearcherID: https://www.researchgate.net/profile/Yupeng_Cun

All publications

  1. Yupeng Cun*, Tsun-Po Yang*, Viktor Achter*, Ulrich Lang, Martin Peifer, Copy number analysis and inference of subclonal populations in cancer genomes using Sclust. Nature Protocols 13,1488–1501 (2018) ,DOI: 10.1038/nprot.2018.033
  2. Julie George*, Jing Shan Lim*, Se Jin Jang, Yupeng Cun(4th/96), …, Reinhard Büttner, Stefan A. Haas, Elisabeth Brambilla, Martin Peifer, Julien Sage & Roman K. Thomas: Comprehensive genomic profiles of small cell lung cancer. Nature 07/2015; 524(7563), DOI:10.1038/nature14664
  3. Yupeng Cun, Holger Fröhlich: netClass: an R-package for network based, integrative biomarker signature discovery. Bioinformatics 01/2014; 30(9)., DOI:10.1093/bioinformatics/btu025
  4. Yupeng Cun, Holger Fröhlich: Network and data integration for biomarker signature discovery via network smoothed T-statistics. PLoS ONE  2013; 8(9):e73074., DOI:10.1371/journal.pone.0073074
  5. Yupeng Cun, Holger Fröhlich: Integrating Prior Knowledge Into Prognostic Biomarker Discovery based on Network Structure, arxiv.org/abs/1212.3214
  6. Yupeng Cun, Holger Fröhlich:  Prognostic gene signatures for patient stratification in breast cancer: accuracy, stability and interpretability of gene selection approaches using prior knowledge on protein-protein interactions. BMC Bioinformatics  2012; 13:69., DOI:10.1186/1471-2105-13-69
  7. Yupeng Cun, Holger Fröhlich: Biomarker gene signature discovery integrating network knowledge. MPDI Biology, 2012 DOI:10.3390/biology1010005
  8. Julie George, Vonn Walter, Martin Peifer, Ludmil B. Alexandrov,…, Yupeng Cun(28th /68), …, Reinhard Büttner, David Neil Hayes, Elisabeth Brambilla, Lynnette Fernandez-Cuesta & Roman K. Thomas: Integrative genomic profiling of large-cell neuroendocrine carcinomas reveals distinct molecular subtypes of high-grade neuroendocrine lung tumors, Nature Communications, | (2018) 9:1048 |DOI: 10.1038/s41467-018-03099-x
  9. Changjun Huang, Yupeng Cun, Haiqin Yu, Zhijun Tong, Bingguang Xiao, Zhongbang Song, Bingwu Wang, Yongping Li, Yong Liu,(2017) Transcriptomic profile of tobacco in response to Tomato zonate spot orthotospovirus infection. Virology Journal :14(1) .2017
  10. Gero Knittel,, Tim Rehkämper, Darya Korovkina, Paul Liedgens, Christian Fritz, Alessandro Torgovnick, Yussor Al-Baldawi, Mona Al-Maarri,Yupeng Cun (9th/32), …, Martin Peifer, Reinhard Buettner, Thorsten Persigehl, Christian Reinhardt:  Two mouse models reveal an actionable PARP1 dependence in aggressive chronic lymphocytic leukemia. Nature Communications, 2017,DOI: 10.1038/s41467-017-00210-6